SNP Detail For rs13333054
1.Mapping Information
Human SNP ID rs13333054
Human chromosome chr16
Human SNP position 85977427
Pig chromosome chr6
Pig SNP position 3319788
2.Annotation Information
PubMed ID21833088
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/21833088
StudyGenetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
Disease/TraitMultiple sclerosis
Initial sample9,772 European ancestry cases, 16,849 European ancestry controls
Replication sample4,218 European ancestry cases, 7,296 European ancestry controls
Region16q24.1
Chromosome idchr16
Chromosome position85977427
Reported geneIRF8
Mapped geneLOC105371388 - LOC105371389
Upstream gene id105371388
Downstream gene id105371389
SNP gene ids
Upstream gene distance28245
Downstream gene distance70392
SNP risk allelers13333054-A
SNPsrs13333054
Merged0
SNP id current13333054
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.00000001
Pvalue mlog8
P value text
Or beta1.11
%95 Ci[1.1-1.13]
PlatformIllumina [465434]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST001198