SNP Detail For rs1332099
1.Mapping Information
Human SNP ID rs1332099
Human chromosome chr10
Human SNP position 99538694
Pig chromosome chr14
Pig SNP position 120172025
2.Annotation Information
PubMed ID26301688
JournalNat Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26301688
StudyMeta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.
Disease/TraitPediatric autoimmune diseases
Initial sample97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry
Replication sampleNA
Region10q24.2
Chromosome idchr10
Chromosome position99538694
Reported geneNKX2-3
Mapped geneNKX2-3 - SLC25A28
Upstream gene id159296
Downstream gene id81894
SNP gene ids
Upstream gene distance2170
Downstream gene distance71824
SNP risk allelers1332099-T
SNPsrs1332099
Merged
SNP id current1332099
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.46
P value0.00000000009
Pvalue mlog10.0457574905606
P value text
Or beta
%95 Ci
PlatformIllumina [7347414] (imputed)
CNVN
Mapped traitautoimmune thyroid disease, type I diabetes mellitus, Common variable immunodeficiency, chronic childhood arthritis, ankylosing spondylitis, psoriasis, celiac disease, ulcerative colitis, Crohn__s disease, autoimmune disease, systemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006812, http://www.ebi.ac.uk/efo/EFO_0001359, http://www.orpha.net/ORDO/Orphanet_1572, http://www.ebi.ac.uk/efo/EFO_0002609, http://www.ebi.ac.uk/efo/EFO_0003898, http://www.ebi.ac.uk/efo/EFO_0000676, http://www.ebi.ac.uk/efo
Study accessionGCST003097