SNP Detail For rs1330950
1.Mapping Information
Human SNP ID rs1330950
Human chromosome chr13
Human SNP position 106686453
Pig chromosome chr11
Pig SNP position 81741926
2.Annotation Information
PubMed ID24554482
JournalJ Neurovirol
Linkwww.ncbi.nlm.nih.gov/pubmed/24554482
StudyGenome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.
Disease/TraitResponse to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)
Initial sample19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls
Replication sampleNA
Region13q33.3
Chromosome idchr13
Chromosome position106686453
Reported geneLINCOO443
Mapped geneLINC00443 - LOC105370349
Upstream gene id100874173
Downstream gene id105370349
SNP gene ids
Upstream gene distance14273
Downstream gene distance87180
SNP risk allelers1330950-?
SNPsrs1330950
Merged0
SNP id current1330950
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.0000008
Pvalue mlog6.09691001300805
P value text(Hispanic)
Or beta17.5
%95 Ci[NR]
PlatformIllumina [936149]
CNVN
Mapped traitresponse to reverse transcriptase inhibitor, HIV-1 infection, peripheral neuropathy
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0061479, http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0003100
Study accessionGCST002365