SNP Detail For rs13306575
1.Mapping Information
Human SNP ID rs13306575
Human chromosome chr1
Human SNP position 183563302
Pig chromosome chr9
Pig SNP position 137112671
2.Annotation Information
PubMed ID26606652
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/26606652
StudyGWAS in an Amerindian ancestry population reveals novel systemic lupus erythematosus risk loci and the role of European admixture.
Disease/TraitSystemic lupus erythematosus
Initial sample862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls
Replication sampleNA
Region1q25.3
Chromosome idchr1
Chromosome position183563302
Reported geneNCF2
Mapped geneNCF2
Upstream gene id
Downstream gene id
SNP gene ids4688
Upstream gene distance
Downstream gene distance
SNP risk allelers13306575-A
SNPsrs13306575
Merged0
SNP id current13306575
Contextmissense_variant
Intergenic0
Allele frequency0.105
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.62
%95 Ci[1.39-1.91]
PlatformIllumina [580483] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003252