SNP Detail For rs1329650
1.Mapping Information
Human SNP ID rs1329650
Human chromosome chr10
Human SNP position 91588363
Pig chromosome chr14
Pig SNP position 112617317
2.Annotation Information
PubMed ID20418890
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20418890
StudyGenome-wide meta-analyses identify multiple loci associated with smoking behavior.
Disease/TraitSmoking behavior
Initial sampleUp to 74,035 European ancestry individuals
Replication sampleUp to 68,988 participants
Region10q23.32
Chromosome idchr10
Chromosome position91588363
Reported geneLOC100188947
Mapped geneHECTD2-AS1
Upstream gene id
Downstream gene id
SNP gene ids100188947
Upstream gene distance
Downstream gene distance
SNP risk allelers1329650-T
SNPsrs1329650
Merged0
SNP id current1329650
Contextregulatory_region_variant
Intergenic0
Allele frequency0.28
P value0.0000000006
Pvalue mlog9.22184874961635
P value text(CPD)
Or beta0.37
%95 Ci[0.25-0.49] CPD decrease
PlatformAffymetrix, Illumina, Perlegen [~ 2500000] (imputed)
CNVN
Mapped traitsmoking behavior
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318
Study accessionGCST000666