Human SNP ID | rs13287547 |
---|---|
Human chromosome | chr9 |
Human SNP position | 16286892 |
Pig chromosome | chr1 |
Pig SNP position | 230239728 |
PubMed ID | 26220383 |
---|---|
Journal | Epilepsy Res |
Link | www.ncbi.nlm.nih.gov/pubmed/26220383 |
Study | GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy. |
Disease/Trait | Epilepsy and lamotrigine-induced maculopapular eruptions |
Initial sample | 34 Korean ancestry cases, 1,080 Korean ancestry healthy controls |
Replication sample | NA |
Region | 9p22.3 |
Chromosome id | chr9 |
Chromosome position | 16286892 |
Reported gene | C9orf92, BNC2 |
Mapped gene | C9orf92 - BNC2 |
Upstream gene id | 100129385 |
Downstream gene id | 54796 |
SNP gene ids | |
Upstream gene distance | 10579 |
Downstream gene distance | 122611 |
SNP risk allele | rs13287547-? |
SNPs | rs13287547 |
Merged | |
SNP id current | 13287547 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.04 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 4.8 |
%95 Ci | [NR] |
Platform | Affymetrix [4893794] (imputed) |
CNV | N |
Mapped trait | response to lamotrigine, maculopapular eruption, epilepsy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007661, http://www.ebi.ac.uk/efo/EFO_1001253, http://www.ebi.ac.uk/efo/EFO_0000474 |
Study accession | GCST002949 |