SNP Detail For rs13287547
1.Mapping Information
Human SNP ID rs13287547
Human chromosome chr9
Human SNP position 16286892
Pig chromosome chr1
Pig SNP position 230239728
2.Annotation Information
PubMed ID26220383
JournalEpilepsy Res
Linkwww.ncbi.nlm.nih.gov/pubmed/26220383
StudyGWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.
Disease/TraitEpilepsy and lamotrigine-induced maculopapular eruptions
Initial sample34 Korean ancestry cases, 1,080 Korean ancestry healthy controls
Replication sampleNA
Region9p22.3
Chromosome idchr9
Chromosome position16286892
Reported geneC9orf92, BNC2
Mapped geneC9orf92 - BNC2
Upstream gene id100129385
Downstream gene id54796
SNP gene ids
Upstream gene distance10579
Downstream gene distance122611
SNP risk allelers13287547-?
SNPsrs13287547
Merged
SNP id current13287547
Contextintergenic_variant
Intergenic1
Allele frequency0.04
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta4.8
%95 Ci[NR]
PlatformAffymetrix [4893794] (imputed)
CNVN
Mapped traitresponse to lamotrigine, maculopapular eruption, epilepsy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007661, http://www.ebi.ac.uk/efo/EFO_1001253, http://www.ebi.ac.uk/efo/EFO_0000474
Study accessionGCST002949