Human SNP ID | rs13281615 |
---|---|
Human chromosome | chr8 |
Human SNP position | 127343372 |
Pig chromosome | chr4 |
Pig SNP position | 13044681 |
PubMed ID | 17529967 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/17529967 |
Study | Genome-wide association study identifies novel breast cancer susceptibility loci. |
Disease/Trait | Breast cancer |
Initial sample | 390 cases,364 controls |
Replication sample | 26,646 cases,24,889 controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 127343372 |
Reported gene | intergenic |
Mapped gene | CASC8, CASC21 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 727677, 103021164 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13281615-C |
SNPs | rs13281615 |
Merged | 0 |
SNP id current | 13281615 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.4 |
P value | 0.000000000005 |
Pvalue mlog | 11.3010299956639 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.05-1.11] |
Platform | Perlegen [205586] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST000035 |
PubMed ID | 23535729 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535729 |
Study | Large-scale genotyping identifies 41 new loci associated with breast cancer risk. |
Disease/Trait | Breast cancer |
Initial sample | 10,052 European ancestry cases, 12,575 European ancestry controls |
Replication sample | 45,290 European ancestry cases, 41,880 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 127343372 |
Reported gene | intergenic |
Mapped gene | CASC8, CASC21 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 727677, 103021164 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13281615-G |
SNPs | rs13281615 |
Merged | 0 |
SNP id current | 13281615 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.41 |
P value | 1E-27 |
Pvalue mlog | 27 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.07-1.12] |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001937 |