SNP Detail For rs13281615
1.Mapping Information
Human SNP ID rs13281615
Human chromosome chr8
Human SNP position 127343372
Pig chromosome chr4
Pig SNP position 13044681
2.Annotation Information
PubMed ID17529967
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/17529967
StudyGenome-wide association study identifies novel breast cancer susceptibility loci.
Disease/TraitBreast cancer
Initial sample390 cases,364 controls
Replication sample26,646 cases,24,889 controls
Region8q24.21
Chromosome idchr8
Chromosome position127343372
Reported geneintergenic
Mapped geneCASC8, CASC21
Upstream gene id
Downstream gene id
SNP gene ids727677, 103021164
Upstream gene distance
Downstream gene distance
SNP risk allelers13281615-C
SNPsrs13281615
Merged0
SNP id current13281615
Contextintron_variant
Intergenic0
Allele frequency0.4
P value0.000000000005
Pvalue mlog11.3010299956639
P value text
Or beta1.08
%95 Ci[1.05-1.11]
PlatformPerlegen [205586]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST000035
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region8q24.21
Chromosome idchr8
Chromosome position127343372
Reported geneintergenic
Mapped geneCASC8, CASC21
Upstream gene id
Downstream gene id
SNP gene ids727677, 103021164
Upstream gene distance
Downstream gene distance
SNP risk allelers13281615-G
SNPsrs13281615
Merged0
SNP id current13281615
Contextintron_variant
Intergenic0
Allele frequency0.41
P value1E-27
Pvalue mlog27
P value text
Or beta1.09
%95 Ci[1.07-1.12]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937