Human SNP ID | rs13254990 |
---|---|
Human chromosome | chr8 |
Human SNP position | 128064205 |
Pig chromosome | chr4 |
Pig SNP position | 12551758 |
PubMed ID | 25279986 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25279986 |
Study | Genome-wide Association Study Identifies Five Susceptibility Loci for Follicular Lymphoma outside the HLA Region. |
Disease/Trait | Follicular lymphoma |
Initial sample | 2,728 European ancestry cases, 7,758 European ancestry controls |
Replication sample | 1,795 European ancestry cases, 5,586 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 128064205 |
Reported gene | PVT1 |
Mapped gene | PVT1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5820 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13254990-T |
SNPs | rs13254990 |
Merged | 0 |
SNP id current | 13254990 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.315 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 1.18 |
%95 Ci | [1.11-1.24] |
Platform | Illumina [up to 21554489] |
CNV | N |
Mapped trait | neoplasm of mature B-cells |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000096 |
Study accession | GCST002643 |