Human SNP ID | rs13252298 |
---|---|
Human chromosome | chr8 |
Human SNP position | 127082911 |
Pig chromosome | chr4 |
Pig SNP position | 13355285 |
PubMed ID | 21743057 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21743057 |
Study | Genome-wide association study identifies new prostate cancer susceptibility loci. |
Disease/Trait | Prostate cancer |
Initial sample | 2,782 European ancestry cases, 4,458 European ancestry controls |
Replication sample | 7,358 European ancestry cases, 6,732 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 127082911 |
Reported gene | intergenic |
Mapped gene | PRNCR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101867536 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13252298-A |
SNPs | rs13252298 |
Merged | 0 |
SNP id current | 13252298 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (conditioned on 5 SNPs) |
Or beta | 1.12 |
%95 Ci | [1.05-1.18] |
Platform | Illumina [571243] |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001147 |
PubMed ID | 26034056 |
Journal | Cancer Discov |
Link | www.ncbi.nlm.nih.gov/pubmed/26034056 |
Study | A large multi-ethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences. |
Disease/Trait | Prostate cancer |
Initial sample | 6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls |
Replication sample | 4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 127082911 |
Reported gene | NR |
Mapped gene | PRNCR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101867536 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13252298-A |
SNPs | rs13252298 |
Merged | 0 |
SNP id current | 13252298 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.71 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.06-1.16] |
Platform | Affymetrix [up to 19977088] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST002944 |