SNP Detail For rs13252298
1.Mapping Information
Human SNP ID rs13252298
Human chromosome chr8
Human SNP position 127082911
Pig chromosome chr4
Pig SNP position 13355285
2.Annotation Information
PubMed ID21743057
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21743057
StudyGenome-wide association study identifies new prostate cancer susceptibility loci.
Disease/TraitProstate cancer
Initial sample2,782 European ancestry cases, 4,458 European ancestry controls
Replication sample7,358 European ancestry cases, 6,732 European ancestry controls
Region8q24.21
Chromosome idchr8
Chromosome position127082911
Reported geneintergenic
Mapped genePRNCR1
Upstream gene id
Downstream gene id
SNP gene ids101867536
Upstream gene distance
Downstream gene distance
SNP risk allelers13252298-A
SNPsrs13252298
Merged0
SNP id current13252298
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(conditioned on 5 SNPs)
Or beta1.12
%95 Ci[1.05-1.18]
PlatformIllumina [571243]
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001147
PubMed ID26034056
JournalCancer Discov
Linkwww.ncbi.nlm.nih.gov/pubmed/26034056
StudyA large multi-ethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.
Disease/TraitProstate cancer
Initial sample6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls
Replication sample4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls
Region8q24.21
Chromosome idchr8
Chromosome position127082911
Reported geneNR
Mapped genePRNCR1
Upstream gene id
Downstream gene id
SNP gene ids101867536
Upstream gene distance
Downstream gene distance
SNP risk allelers13252298-A
SNPsrs13252298
Merged0
SNP id current13252298
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.71
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.11
%95 Ci[1.06-1.16]
PlatformAffymetrix [up to 19977088] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002944