SNP Detail For rs13245690
1.Mapping Information
Human SNP ID rs13245690
Human chromosome chr7
Human SNP position 121145010
Pig chromosome chr18
Pig SNP position 27390784
2.Annotation Information
PubMed ID22504420
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504420
StudyGenome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Disease/TraitBone mineral density
Initial sampleUp to 32,961 European and East Asian ancestry individuals
Replication sampleUp to 50,933 European and East Asian ancestry individuals
Region7q31.31
Chromosome idchr7
Chromosome position121145010
Reported geneC7orf58
Mapped geneCPED1
Upstream gene id
Downstream gene id
SNP gene ids79974
Upstream gene distance
Downstream gene distance
SNP risk allelers13245690-A
SNPsrs13245690
Merged0
SNP id current13245690
Contextintron_variant
Intergenic0
Allele frequency0.65
P value0.00000000002
Pvalue mlog10.698970004336
P value text(LSBMD)
Or beta0.05
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001482