SNP Detail For rs13245023
1.Mapping Information
Human SNP ID rs13245023
Human chromosome chr7
Human SNP position 20845476
Pig chromosome chr9
Pig SNP position 99197617
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region7p21.1
Chromosome idchr7
Chromosome position20845476
Reported geneNR
Mapped geneLINC01162
Upstream gene id
Downstream gene id
SNP gene ids104355138
Upstream gene distance
Downstream gene distance
SNP risk allelers13245023-C
SNPsrs13245023
Merged0
SNP id current13245023
Contextintron_variant
Intergenic0
Allele frequency0.964100804151624
P value0.000009
Pvalue mlog5.04575749056067
P value text(IGP77)
Or beta0.4218
%95 Ci[0.24-0.61] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848