Human SNP ID | rs1324183 |
---|---|
Human chromosome | chr9 |
Human SNP position | 13557492 |
Pig chromosome | chr1 |
Pig SNP position | 232738695 |
PubMed ID | 23291589 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23291589 |
Study | Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus. |
Disease/Trait | Corneal structure |
Initial sample | 13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals |
Replication sample | NA |
Region | 9p23 |
Chromosome id | chr9 |
Chromosome position | 13557492 |
Reported gene | NF1B, MPDZ |
Mapped gene | LOC105375977 - LOC101929507 |
Upstream gene id | 105375977 |
Downstream gene id | 101929507 |
SNP gene ids | |
Upstream gene distance | 69966 |
Downstream gene distance | 250806 |
SNP risk allele | rs1324183-A |
SNPs | rs1324183 |
Merged | 0 |
SNP id current | 1324183 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.2 |
P value | 0.000000008 |
Pvalue mlog | 8.09691001300805 |
P value text | |
Or beta | 0.05 |
%95 Ci | [0.011-0.089] unit decrease |
Platform | Affymetrix, Illumina [~ 1000000] (imputed) |
CNV | N |
Mapped trait | corneal topography |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004345 |
Study accession | GCST001806 |