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SNP Detail For rs13241165
1.Mapping Information
| Human SNP ID | rs13241165 |
|---|---|
| Human chromosome | chr7 |
| Human SNP position | 130747779 |
| Pig chromosome | chr18 |
| Pig SNP position | 19154480 |
2.Annotation Information
| PubMed ID | 25961943 |
|---|---|
| Journal | Nat Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
| Study | The impact of low-frequency and rare variants on lipid levels. |
| Disease/Trait | HDL cholesterol |
| Initial sample | up to 62,166 European ancestry individuals |
| Replication sample | NA |
| Region | 7q32.2 |
| Chromosome id | chr7 |
| Chromosome position | 130747779 |
| Reported gene | KLF14 |
| Mapped gene | LOC105375508 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 105375508 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs13241165-T |
| SNPs | rs13241165 |
| Merged | |
| SNP id current | 13241165 |
| Context | intergenic_variant |
| Intergenic | 0 |
| Allele frequency | 0.51 |
| P value | 0.0000000008 |
| Pvalue mlog | 9.09691001300805 |
| P value text | |
| Or beta | 0.037 |
| %95 Ci | [0.025-0.049] s.d. increase |
| Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
| CNV | N |
| Mapped trait | high density lipoprotein cholesterol measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
| Study accession | GCST002899 |
| PubMed ID | 25961943 |
| Journal | Nat Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
| Study | The impact of low-frequency and rare variants on lipid levels. |
| Disease/Trait | HDL cholesterol |
| Initial sample | up to 62,166 European ancestry individuals |
| Replication sample | NA |
| Region | 7q32.2 |
| Chromosome id | chr7 |
| Chromosome position | 130747779 |
| Reported gene | KLF14 |
| Mapped gene | LOC105375508 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 105375508 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs13241165-T |
| SNPs | rs13241165 |
| Merged | |
| SNP id current | 13241165 |
| Context | intergenic_variant |
| Intergenic | 0 |
| Allele frequency | 0.51 |
| P value | 0.0000000008 |
| Pvalue mlog | 9.09691001300805 |
| P value text | |
| Or beta | 0.037 |
| %95 Ci | [0.025-0.049] s.d. increase |
| Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
| CNV | N |
| Mapped trait | high density lipoprotein cholesterol measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
| Study accession | GCST002899 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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