SNP Detail For rs132390
1.Mapping Information
Human SNP ID rs132390
Human chromosome chr22
Human SNP position 29225488
Pig chromosome chr14
Pig SNP position 49339353
2.Annotation Information
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region22q12.2
Chromosome idchr22
Chromosome position29225488
Reported geneEMID1, RHBDD3, EWSR1, CHEK2
Mapped geneEMID1, LOC105372985
Upstream gene id
Downstream gene id
SNP gene ids129080, 105372985
Upstream gene distance
Downstream gene distance
SNP risk allelers132390-C
SNPsrs132390
Merged0
SNP id current132390
Contextintron_variant
Intergenic0
Allele frequency0.036
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.12
%95 Ci[1.07-1.18]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937