Human SNP ID | rs1318862 |
---|---|
Human chromosome | chr11 |
Human SNP position | 92273935 |
Pig chromosome | chr9 |
Pig SNP position | 28055061 |
PubMed ID | 25607358 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25607358 |
Study | Common genetic variants influence human subcortical brain structures. |
Disease/Trait | Subcortical brain region volumes |
Initial sample | up to 13,171 European ancestry individuals |
Replication sample | up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals |
Region | 11q14.3 |
Chromosome id | chr11 |
Chromosome position | 92273935 |
Reported gene | FAT3 |
Mapped gene | RPL7AP57 - FAT3 |
Upstream gene id | 100271537 |
Downstream gene id | 120114 |
SNP gene ids | |
Upstream gene distance | 111988 |
Downstream gene distance | 40348 |
SNP risk allele | rs1318862-T |
SNPs | rs1318862 |
Merged | 0 |
SNP id current | 1318862 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.58 |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | (Caudate, EA) |
Or beta | 26.86 |
%95 Ci | [17.80-35.92] mm3 increase |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | caudate nucleus volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004830 |
Study accession | GCST002756 |