SNP Detail For rs1318862
1.Mapping Information
Human SNP ID rs1318862
Human chromosome chr11
Human SNP position 92273935
Pig chromosome chr9
Pig SNP position 28055061
2.Annotation Information
PubMed ID25607358
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25607358
StudyCommon genetic variants influence human subcortical brain structures.
Disease/TraitSubcortical brain region volumes
Initial sampleup to 13,171 European ancestry individuals
Replication sampleup to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals
Region11q14.3
Chromosome idchr11
Chromosome position92273935
Reported geneFAT3
Mapped geneRPL7AP57 - FAT3
Upstream gene id100271537
Downstream gene id120114
SNP gene ids
Upstream gene distance111988
Downstream gene distance40348
SNP risk allelers1318862-T
SNPsrs1318862
Merged0
SNP id current1318862
Contextintergenic_variant
Intergenic1
Allele frequency0.58
P value0.000000006
Pvalue mlog8.22184874961635
P value text(Caudate, EA)
Or beta26.86
%95 Ci[17.80-35.92] mm3 increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitcaudate nucleus volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004830
Study accessionGCST002756