Human SNP ID | rs1318653 |
---|---|
Human chromosome | chr1 |
Human SNP position | 207841577 |
Pig chromosome | chr9 |
Pig SNP position | 148494672 |
PubMed ID | 25344690 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25344690 |
Study | Common variants associated with general and MMR vaccine-related febrile seizures. |
Disease/Trait | Febrile seizures |
Initial sample | 929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls |
Replication sample | Up to 408 European ancestry MMR vaccine-related febrile seizures cases, Up to 1,034 European ancestry MMR vaccine-unrelated febrile seizures cases, Up to 1,645 European ancestry controls |
Region | 1q32.2 |
Chromosome id | chr1 |
Chromosome position | 207841577 |
Reported gene | intergenic |
Mapped gene | C1orf132 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100128537 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1318653-T |
SNPs | rs1318653 |
Merged | 0 |
SNP id current | 1318653 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.771 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | (MMR-related vs MMR-unrelated) |
Or beta | 1.48 |
%95 Ci | [1.30-1.67] |
Platform | Illumina [up to 8129553] (imputed) |
CNV | N |
Mapped trait | febrile seizures, MMR-related febrile seizures |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0002373, http://www.ebi.ac.uk/efo/EFO_0006519 |
Study accession | GCST002672 |
PubMed ID | 25344690 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25344690 |
Study | Common variants associated with general and MMR vaccine-related febrile seizures. |
Disease/Trait | Febrile seizures (MMR vaccine-related) |
Initial sample | 929 European ancestry cases, 4,118 European ancestry controls |
Replication sample | Up to 408 European ancestry cases, Up to 1,645 European ancestry controls |
Region | 1q32.2 |
Chromosome id | chr1 |
Chromosome position | 207841577 |
Reported gene | CD46, CD34 |
Mapped gene | C1orf132 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100128537 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1318653-T |
SNPs | rs1318653 |
Merged | 0 |
SNP id current | 1318653 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.774 |
P value | 0.0000000001 |
Pvalue mlog | 10 |
P value text | |
Or beta | 1.43 |
%95 Ci | [1.28-1.59] |
Platform | Illumina [8129524] (imputed) |
CNV | N |
Mapped trait | MMR-related febrile seizures |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006519 |
Study accession | GCST002674 |