SNP Detail For rs13179411
1.Mapping Information
Human SNP ID rs13179411
Human chromosome chr5
Human SNP position 134564823
Pig chromosome chr2
Pig SNP position 142428270
2.Annotation Information
PubMed ID25231870
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25231870
StudyParent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
Disease/TraitMenarche (age at onset)
Initial sampleUp to 182,413 European ancestry females
Replication sampleNA
Region5q31.1
Chromosome idchr5
Chromosome position134564823
Reported genePHF15, TCF7
Mapped geneJADE2
Upstream gene id
Downstream gene id
SNP gene ids23338
Upstream gene distance
Downstream gene distance
SNP risk allelers13179411-T
SNPsrs13179411
Merged0
SNP id current13179411
Contextintron_variant
Intergenic0
Allele frequency0.17
P value3E-20
Pvalue mlog19.5228787452803
P value text
Or beta0.06
%95 Ci[0.046-0.074] unit increase
PlatformAffymetrix, Illumina [2441815] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002541