Human SNP ID | rs13179411 |
---|---|
Human chromosome | chr5 |
Human SNP position | 134564823 |
Pig chromosome | chr2 |
Pig SNP position | 142428270 |
PubMed ID | 25231870 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25231870 |
Study | Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. |
Disease/Trait | Menarche (age at onset) |
Initial sample | Up to 182,413 European ancestry females |
Replication sample | NA |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 134564823 |
Reported gene | PHF15, TCF7 |
Mapped gene | JADE2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23338 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13179411-T |
SNPs | rs13179411 |
Merged | 0 |
SNP id current | 13179411 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.17 |
P value | 3E-20 |
Pvalue mlog | 19.5228787452803 |
P value text | |
Or beta | 0.06 |
%95 Ci | [0.046-0.074] unit increase |
Platform | Affymetrix, Illumina [2441815] (imputed) |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST002541 |