Human SNP ID | rs13178362 |
---|---|
Human chromosome | chr5 |
Human SNP position | 30178906 |
Pig chromosome | chr16 |
Pig SNP position | 17365520 |
PubMed ID | 24755620 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24755620 |
Study | Overrepresentation of glutamate signaling in Alzheimer__s disease: network-based pathway enrichment using meta-analysis of genome-wide association studies. |
Disease/Trait | Alzheimer__s disease |
Initial sample | 2,540 European ancestry cases, 2,029 European ancestry controls |
Replication sample | NA |
Region | 5p13.3 |
Chromosome id | chr5 |
Chromosome position | 30178906 |
Reported gene | intergenic |
Mapped gene | LOC105374707 - LOC102723637 |
Upstream gene id | 105374707 |
Downstream gene id | 102723637 |
SNP gene ids | |
Upstream gene distance | 76519 |
Downstream gene distance | 280180 |
SNP risk allele | rs13178362-T |
SNPs | rs13178362 |
Merged | 0 |
SNP id current | 13178362 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 1.3333 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [1216213] (imputed) |
CNV | N |
Mapped trait | Alzheimers disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249 |
Study accession | GCST002422 |