SNP Detail For rs13178362
1.Mapping Information
Human SNP ID rs13178362
Human chromosome chr5
Human SNP position 30178906
Pig chromosome chr16
Pig SNP position 17365520
2.Annotation Information
PubMed ID24755620
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24755620
StudyOverrepresentation of glutamate signaling in Alzheimer__s disease: network-based pathway enrichment using meta-analysis of genome-wide association studies.
Disease/TraitAlzheimer__s disease
Initial sample2,540 European ancestry cases, 2,029 European ancestry controls
Replication sampleNA
Region5p13.3
Chromosome idchr5
Chromosome position30178906
Reported geneintergenic
Mapped geneLOC105374707 - LOC102723637
Upstream gene id105374707
Downstream gene id102723637
SNP gene ids
Upstream gene distance76519
Downstream gene distance280180
SNP risk allelers13178362-T
SNPsrs13178362
Merged0
SNP id current13178362
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta1.3333
%95 Ci[NR]
PlatformAffymetrix, Illumina [1216213] (imputed)
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST002422