SNP Detail For rs1317082
1.Mapping Information
Human SNP ID rs1317082
Human chromosome chr3
Human SNP position 169779797
Pig chromosome chr13
Pig SNP position 117168566
2.Annotation Information
PubMed ID23001564
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23001564
StudyGenome-wide meta-analysis points to CTC1 and ZNF676 as genes regulating telomere homeostasis in humans.
Disease/TraitTelomere length
Initial sample9,190 European ancestry individuals
Replication sample2,226 individuals
Region3q26.2
Chromosome idchr3
Chromosome position169779797
Reported geneTERC
Mapped geneMYNN
Upstream gene id
Downstream gene id
SNP gene ids55892
Upstream gene distance
Downstream gene distance
SNP risk allelers1317082-G
SNPsrs1317082
Merged0
SNP id current1317082
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.2875
P value0.00000001
Pvalue mlog8
P value text
Or beta0.0679
%95 Ci[0.046-0.089] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittelomere length
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004505
Study accessionGCST001697