SNP Detail For rs1316952
1.Mapping Information
Human SNP ID rs1316952
Human chromosome chr12
Human SNP position 123915003
Pig chromosome chr14
Pig SNP position 30813338
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral adipose tissue/subcutaneous adipose tissue ratio
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region12q24.31
Chromosome idchr12
Chromosome position123915003
Reported geneDNAH10
Mapped geneDNAH10
Upstream gene id
Downstream gene id
SNP gene ids196385
Upstream gene distance
Downstream gene distance
SNP risk allelers1316952-T
SNPsrs1316952
Merged0
SNP id current1316952
Contextsplice_region_variant
Intergenic0
Allele frequency0.87
P value0.0000009
Pvalue mlog6.04575749056067
P value text(overall)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral:subcutaneous adipose tissue ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004767
Study accessionGCST001524
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral adipose tissue/subcutaneous adipose tissue ratio
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region12q24.31
Chromosome idchr12
Chromosome position123915003
Reported geneDNAH10
Mapped geneDNAH10
Upstream gene id
Downstream gene id
SNP gene ids196385
Upstream gene distance
Downstream gene distance
SNP risk allelers1316952-T
SNPsrs1316952
Merged0
SNP id current1316952
Contextsplice_region_variant
Intergenic0
Allele frequency0.87
P value0.0000001
Pvalue mlog7
P value text(women)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral:subcutaneous adipose tissue ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004767
Study accessionGCST001524
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral adipose tissue adjusted for BMI
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region12q24.31
Chromosome idchr12
Chromosome position123915003
Reported geneDNAH10
Mapped geneDNAH10
Upstream gene id
Downstream gene id
SNP gene ids196385
Upstream gene distance
Downstream gene distance
SNP risk allelers1316952-T
SNPsrs1316952
Merged0
SNP id current1316952
Contextsplice_region_variant
Intergenic0
Allele frequency0.87
P value0.000005
Pvalue mlog5.30102999566398
P value text(overall)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral adipose tissue measurement, body mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004765, http://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001523