Human SNP ID | rs1316952 |
---|---|
Human chromosome | chr12 |
Human SNP position | 123915003 |
Pig chromosome | chr14 |
Pig SNP position | 30813338 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Visceral adipose tissue/subcutaneous adipose tissue ratio |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 12q24.31 |
Chromosome id | chr12 |
Chromosome position | 123915003 |
Reported gene | DNAH10 |
Mapped gene | DNAH10 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 196385 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1316952-T |
SNPs | rs1316952 |
Merged | 0 |
SNP id current | 1316952 |
Context | splice_region_variant |
Intergenic | 0 |
Allele frequency | 0.87 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (overall) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | visceral:subcutaneous adipose tissue ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004767 |
Study accession | GCST001524 |
PubMed ID | 22589738 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Visceral adipose tissue/subcutaneous adipose tissue ratio |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 12q24.31 |
Chromosome id | chr12 |
Chromosome position | 123915003 |
Reported gene | DNAH10 |
Mapped gene | DNAH10 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 196385 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1316952-T |
SNPs | rs1316952 |
Merged | 0 |
SNP id current | 1316952 |
Context | splice_region_variant |
Intergenic | 0 |
Allele frequency | 0.87 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (women) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | visceral:subcutaneous adipose tissue ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004767 |
Study accession | GCST001524 |
PubMed ID | 22589738 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Visceral adipose tissue adjusted for BMI |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 12q24.31 |
Chromosome id | chr12 |
Chromosome position | 123915003 |
Reported gene | DNAH10 |
Mapped gene | DNAH10 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 196385 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1316952-T |
SNPs | rs1316952 |
Merged | 0 |
SNP id current | 1316952 |
Context | splice_region_variant |
Intergenic | 0 |
Allele frequency | 0.87 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (overall) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | visceral adipose tissue measurement, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004765, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST001523 |