SNP Detail For rs13152543
1.Mapping Information
Human SNP ID rs13152543
Human chromosome chr4
Human SNP position 84656388
Pig chromosome chr8
Pig SNP position 143425808
2.Annotation Information
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCerebral amyloid deposition (PET imaging)
Initial sampleup to 883 European and other ancestry individuals
Replication sampleNA
Region4q21.23
Chromosome idchr4
Chromosome position84656388
Reported geneCDS1, WDFY3
Mapped geneCDS1 - WDFY3
Upstream gene id1040
Downstream gene id23001
SNP gene ids
Upstream gene distance5048
Downstream gene distance13149
SNP risk allelers13152543-A
SNPsrs13152543
Merged
SNP id current13152543
Contextintergenic_variant
Intergenic1
Allele frequency0.01
P value0.000003
Pvalue mlog5.52287874528033
P value text(correcting APOE e4)
Or beta0.2007
%95 Ci[NR] unit decrease
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcerebral amyloid deposition measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007707
Study accessionGCST003073