SNP Detail For rs13151961
1.Mapping Information
Human SNP ID rs13151961
Human chromosome chr4
Human SNP position 122194347
Pig chromosome chr8
Pig SNP position 109058461
2.Annotation Information
PubMed ID20190752
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20190752
StudyMultiple common variants for celiac disease influencing immune gene expression.
Disease/TraitCeliac disease
Initial sample4,533 European ancestry cases, 10,750 European ancestry controls
Replication sample4,918 European ancestry cases, 5,684 European ancestry controls
Region4q27
Chromosome idchr4
Chromosome position122194347
Reported geneIL2, IL21
Mapped geneKIAA1109
Upstream gene id
Downstream gene id
SNP gene ids84162
Upstream gene distance
Downstream gene distance
SNP risk allelers13151961-?
SNPsrs13151961
Merged0
SNP id current13151961
Contextintron_variant
Intergenic0
Allele frequency0.86
P value2E-27
Pvalue mlog26.698970004336
P value text
Or beta1.35
%95 Ci[1.28-1.43]
PlatformIllumina [292387]
CNVN
Mapped traitceliac disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001060
Study accessionGCST000612
PubMed ID24999842
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24999842
StudyGenome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.
Disease/TraitCeliac disease
Initial sample1,550 European ancestry cases, 3,084 European ancestry controls
Replication sampleNA
Region4q27
Chromosome idchr4
Chromosome position122194347
Reported geneIL2, ADAD1, KIAA1109, IL21
Mapped geneKIAA1109
Upstream gene id
Downstream gene id
SNP gene ids84162
Upstream gene distance
Downstream gene distance
SNP risk allelers13151961-?
SNPsrs13151961
Merged0
SNP id current13151961
Contextintron_variant
Intergenic0
Allele frequency
P value0.00000000003
Pvalue mlog10.5228787452803
P value text
Or beta1.54
%95 Ci[1.37-1.75]
PlatformIllumina [517345]
CNVN
Mapped traitceliac disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001060
Study accessionGCST002520