Human SNP ID | rs13151961 |
---|---|
Human chromosome | chr4 |
Human SNP position | 122194347 |
Pig chromosome | chr8 |
Pig SNP position | 109058461 |
PubMed ID | 20190752 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20190752 |
Study | Multiple common variants for celiac disease influencing immune gene expression. |
Disease/Trait | Celiac disease |
Initial sample | 4,533 European ancestry cases, 10,750 European ancestry controls |
Replication sample | 4,918 European ancestry cases, 5,684 European ancestry controls |
Region | 4q27 |
Chromosome id | chr4 |
Chromosome position | 122194347 |
Reported gene | IL2, IL21 |
Mapped gene | KIAA1109 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 84162 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13151961-? |
SNPs | rs13151961 |
Merged | 0 |
SNP id current | 13151961 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.86 |
P value | 2E-27 |
Pvalue mlog | 26.698970004336 |
P value text | |
Or beta | 1.35 |
%95 Ci | [1.28-1.43] |
Platform | Illumina [292387] |
CNV | N |
Mapped trait | celiac disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001060 |
Study accession | GCST000612 |
PubMed ID | 24999842 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24999842 |
Study | Genome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus. |
Disease/Trait | Celiac disease |
Initial sample | 1,550 European ancestry cases, 3,084 European ancestry controls |
Replication sample | NA |
Region | 4q27 |
Chromosome id | chr4 |
Chromosome position | 122194347 |
Reported gene | IL2, ADAD1, KIAA1109, IL21 |
Mapped gene | KIAA1109 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 84162 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13151961-? |
SNPs | rs13151961 |
Merged | 0 |
SNP id current | 13151961 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.00000000003 |
Pvalue mlog | 10.5228787452803 |
P value text | |
Or beta | 1.54 |
%95 Ci | [1.37-1.75] |
Platform | Illumina [517345] |
CNV | N |
Mapped trait | celiac disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001060 |
Study accession | GCST002520 |