Human SNP ID | rs13117307 |
---|---|
Human chromosome | chr4 |
Human SNP position | 55885574 |
Pig chromosome | chr8 |
Pig SNP position | 58333460 |
PubMed ID | 23817570 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23817570 |
Study | A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12. |
Disease/Trait | Cervical cancer |
Initial sample | Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls |
Replication sample | 4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls |
Region | 4q12 |
Chromosome id | chr4 |
Chromosome position | 55885574 |
Reported gene | EXOC1 |
Mapped gene | EXOC1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55763 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13117307-T |
SNPs | rs13117307 |
Merged | 0 |
SNP id current | 13117307 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | (Matched) |
Or beta | 1.28 |
%95 Ci | [1.19-1.38] |
Platform | Affymetrix [563339] |
CNV | N |
Mapped trait | cervical carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001061 |
Study accession | GCST002082 |