SNP Detail For rs13117307
1.Mapping Information
Human SNP ID rs13117307
Human chromosome chr4
Human SNP position 55885574
Pig chromosome chr8
Pig SNP position 58333460
2.Annotation Information
PubMed ID23817570
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23817570
StudyA genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.
Disease/TraitCervical cancer
Initial sampleUp to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls
Replication sample4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls
Region4q12
Chromosome idchr4
Chromosome position55885574
Reported geneEXOC1
Mapped geneEXOC1
Upstream gene id
Downstream gene id
SNP gene ids55763
Upstream gene distance
Downstream gene distance
SNP risk allelers13117307-T
SNPsrs13117307
Merged0
SNP id current13117307
Contextintron_variant
Intergenic0
Allele frequency0.1
P value0.0000000003
Pvalue mlog9.52287874528033
P value text(Matched)
Or beta1.28
%95 Ci[1.19-1.38]
PlatformAffymetrix [563339]
CNVN
Mapped traitcervical carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001061
Study accessionGCST002082