SNP Detail For rs13111989
1.Mapping Information
Human SNP ID rs13111989
Human chromosome chr4
Human SNP position 176621822
Pig chromosome chr15
Pig SNP position 44696259
2.Annotation Information
PubMed ID22174851
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22174851
StudyGenomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.
Disease/TraitHIV-1 viral setpoint
Initial sample496 African ancestry cases
Replication sampleNA
Region4q34.3
Chromosome idchr4
Chromosome position176621822
Reported geneVEGFC
Mapped geneLOC105377554 - LOC105377555
Upstream gene id105377554
Downstream gene id105377555
SNP gene ids
Upstream gene distance100116
Downstream gene distance32335
SNP risk allelers13111989-?
SNPsrs13111989
Merged0
SNP id current13111989
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [990115]
CNVN
Mapped traitHIV viral set point measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006319
Study accessionGCST001352