Human SNP ID | rs13111989 |
---|---|
Human chromosome | chr4 |
Human SNP position | 176621822 |
Pig chromosome | chr15 |
Pig SNP position | 44696259 |
PubMed ID | 22174851 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/22174851 |
Study | Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure. |
Disease/Trait | HIV-1 viral setpoint |
Initial sample | 496 African ancestry cases |
Replication sample | NA |
Region | 4q34.3 |
Chromosome id | chr4 |
Chromosome position | 176621822 |
Reported gene | VEGFC |
Mapped gene | LOC105377554 - LOC105377555 |
Upstream gene id | 105377554 |
Downstream gene id | 105377555 |
SNP gene ids | |
Upstream gene distance | 100116 |
Downstream gene distance | 32335 |
SNP risk allele | rs13111989-? |
SNPs | rs13111989 |
Merged | 0 |
SNP id current | 13111989 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [990115] |
CNV | N |
Mapped trait | HIV viral set point measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006319 |
Study accession | GCST001352 |