Human SNP ID | rs13103223 |
---|---|
Human chromosome | chr4 |
Human SNP position | 187702801 |
Pig chromosome | chr17 |
Pig SNP position | 8488028 |
PubMed ID | 25646338 |
---|---|
Journal | Am J Clin Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/25646338 |
Study | Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Trans fatty acid levels |
Initial sample | 8,013 European ancestry individuals |
Replication sample | 1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals |
Region | 4q35.2 |
Chromosome id | chr4 |
Chromosome position | 187702801 |
Reported gene | NR |
Mapped gene | LOC105377603 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105377603 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13103223-T |
SNPs | rs13103223 |
Merged | 0 |
SNP id current | 13103223 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.9142 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (Trans/trans-18:2, EA) |
Or beta | 0.0023 |
%95 Ci | [0.0013-0.0033] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | trans fatty acid measurement, trans/trans-18:2 fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006826 |
Study accession | GCST002721 |