SNP Detail For rs13100563
1.Mapping Information
Human SNP ID rs13100563
Human chromosome chr3
Human SNP position 60076299
Pig chromosome chr13
Pig SNP position 45892147
2.Annotation Information
PubMed ID25644384
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25644384
StudyGenetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53鈥?49).
Disease/TraitCognitive function
Initial sample51,719 European ancestry individuals 1,473 Erasmus Rupchen Family individuals, 327 Korculan individuals, 430 Orcadian individuals
Replication sampleNA
Region3p14.2
Chromosome idchr3
Chromosome position60076299
Reported geneFHIT
Mapped geneFHIT
Upstream gene id
Downstream gene id
SNP gene ids2272
Upstream gene distance
Downstream gene distance
SNP risk allelers13100563-?
SNPsrs13100563
Merged0
SNP id current13100563
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.0393
%95 Ci[0.022-0.056] unit decrease
PlatformAffymetrix, Illumina [2478500] (imputed)
CNVN
Mapped traitcognition
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003925
Study accessionGCST002774