SNP Detail For rs13085837
1.Mapping Information
Human SNP ID rs13085837
Human chromosome chr3
Human SNP position 15362696
Pig chromosome chr13
Pig SNP position 2539344
2.Annotation Information
PubMed ID25130324
JournalGenes Brain Behav
Linkwww.ncbi.nlm.nih.gov/pubmed/25130324
StudyA genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl__s gyrus.
Disease/TraitHeschl__s gyrus morphology
Initial sample1,778 European ancestry individuals, 1,276 individuals
Replication sampleNA
Region3p25.1
Chromosome idchr3
Chromosome position15362696
Reported geneSH3BP5
Mapped geneSH3BP5 - HMGN2P7
Upstream gene id9467
Downstream gene id644498
SNP gene ids
Upstream gene distance21302
Downstream gene distance11557
SNP risk allelers13085837-A
SNPsrs13085837
Merged0
SNP id current13085837
Contextregulatory_region_variant
Intergenic1
Allele frequency0.12
P value0.000001
Pvalue mlog6
P value text(Right HG area)
Or beta7.41
%95 Ciunit decrease
PlatformAffymetrix, Illumina [4103035] (imputed)
CNVN
Mapped traitHeschl__s gyrus morphology measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005852
Study accessionGCST002579