SNP Detail For rs13078807
1.Mapping Information
Human SNP ID rs13078807
Human chromosome chr3
Human SNP position 85835000
Pig chromosome chr13
Pig SNP position 180998423
2.Annotation Information
PubMed ID20935630
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20935630
StudyAssociation analyses of 249,796 individuals reveal 18 new loci associated with body mass index.
Disease/TraitBody mass index
Initial sampleUp to 123,865 European ancestry individuals
Replication sampleUp to 125,931 European ancestry individuals
Region3p12.1
Chromosome idchr3
Chromosome position85835000
Reported geneCADM2
Mapped geneCADM2
Upstream gene id
Downstream gene id
SNP gene ids253559
Upstream gene distance
Downstream gene distance
SNP risk allelers13078807-G
SNPsrs13078807
Merged0
SNP id current13078807
Contextintron_variant
Intergenic0
Allele frequency0.2
P value0.00000000004
Pvalue mlog10.397940008672
P value text
Or beta0.1
%95 Ci[0.06-0.14] kg/m2 increase
PlatformAffymetrix, Illumina, Perlegen [~ 2800000] (imputed)
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST000830
PubMed ID23563607
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23563607
StudyGenome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
Disease/TraitObesity
Initial sample93,015 European ancestry overweight individuals, 32,858 European ancestry class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls
Replication sample65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls
Region3p12.1
Chromosome idchr3
Chromosome position85835000
Reported geneCADM2
Mapped geneCADM2
Upstream gene id
Downstream gene id
SNP gene ids253559
Upstream gene distance
Downstream gene distance
SNP risk allelers13078807-G
SNPsrs13078807
Merged0
SNP id current13078807
Contextintron_variant
Intergenic0
Allele frequency0.2
P value0.00000000003
Pvalue mlog10.5228787452803
P value text(Overweight)
Or beta1.06
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 2800000] (imputed)
CNVN
Mapped traitobesity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001073
Study accessionGCST001953