SNP Detail For rs13077101
1.Mapping Information
Human SNP ID rs13077101
Human chromosome chr3
Human SNP position 120706484
Pig chromosome JH118974-1
Pig SNP position 178403
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region3q13.33
Chromosome idchr3
Chromosome position120706484
Reported geneGTF2E1, RABL3
Mapped geneRABL3
Upstream gene id
Downstream gene id
SNP gene ids285282
Upstream gene distance
Downstream gene distance
SNP risk allelers13077101-G
SNPsrs13077101
Merged0
SNP id current13077101
Contextintron_variant
Intergenic0
Allele frequency0.177
P value0.0000002
Pvalue mlog6.69897000433601
P value text(AST/ALT)
Or beta0.03
%95 Ci[NR] unit increase
PlatformIllumina [899892]
CNVN
Mapped traitaspartate aminotransferase measurement, serum alanine aminotransferase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004736, http://www.ebi.ac.uk/efo/EFO_0004735
Study accessionGCST001762
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region3q13.33
Chromosome idchr3
Chromosome position120706484
Reported geneGTF2E1, RABL3
Mapped geneRABL3
Upstream gene id
Downstream gene id
SNP gene ids285282
Upstream gene distance
Downstream gene distance
SNP risk allelers13077101-G
SNPsrs13077101
Merged0
SNP id current13077101
Contextintron_variant
Intergenic0
Allele frequency0.177
P value0.000001
Pvalue mlog6
P value text(ALT/AST)
Or beta0.03
%95 Ci[NR] unit increase
PlatformIllumina [899892]
CNVN
Mapped traitaspartate aminotransferase measurement, serum alanine aminotransferase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004736, http://www.ebi.ac.uk/efo/EFO_0004735
Study accessionGCST001762