SNP Detail For rs13072153
1.Mapping Information
Human SNP ID rs13072153
Human chromosome chr3
Human SNP position 123459285
Pig chromosome chr13
Pig SNP position 146525080
2.Annotation Information
PubMed ID26420894
JournalNephrol Dial Transplant
Linkwww.ncbi.nlm.nih.gov/pubmed/26420894
StudyGenetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.
Disease/TraitChronic kidney disease
Initial sample658 European ancestry child cases, 1,347 European ancestry child controls
Replication sampleNA
Region3q21.1
Chromosome idchr3
Chromosome position123459285
Reported geneADCY5, PTPLB
Mapped geneADCY5 - HACD2
Upstream gene id111
Downstream gene id201562
SNP gene ids
Upstream gene distance10647
Downstream gene distance35231
SNP risk allelers13072153-?
SNPsrs13072153
Merged
SNP id current13072153
Contextintergenic_variant
Intergenic1
Allele frequency0.62
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.43
%95 Ci[1.23-1.67]
PlatformIllumina [~ 8300000] (imputed)
CNVN
Mapped traitchronic kidney disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003884
Study accessionGCST003140