Human SNP ID | rs13072153 |
---|---|
Human chromosome | chr3 |
Human SNP position | 123459285 |
Pig chromosome | chr13 |
Pig SNP position | 146525080 |
PubMed ID | 26420894 |
---|---|
Journal | Nephrol Dial Transplant |
Link | www.ncbi.nlm.nih.gov/pubmed/26420894 |
Study | Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium. |
Disease/Trait | Chronic kidney disease |
Initial sample | 658 European ancestry child cases, 1,347 European ancestry child controls |
Replication sample | NA |
Region | 3q21.1 |
Chromosome id | chr3 |
Chromosome position | 123459285 |
Reported gene | ADCY5, PTPLB |
Mapped gene | ADCY5 - HACD2 |
Upstream gene id | 111 |
Downstream gene id | 201562 |
SNP gene ids | |
Upstream gene distance | 10647 |
Downstream gene distance | 35231 |
SNP risk allele | rs13072153-? |
SNPs | rs13072153 |
Merged | |
SNP id current | 13072153 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.62 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.43 |
%95 Ci | [1.23-1.67] |
Platform | Illumina [~ 8300000] (imputed) |
CNV | N |
Mapped trait | chronic kidney disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003884 |
Study accession | GCST003140 |