Human SNP ID | rs13064954 |
---|---|
Human chromosome | chr3 |
Human SNP position | 157136953 |
Pig chromosome | chr13 |
Pig SNP position | 105133450 |
PubMed ID | 21441570 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21441570 |
Study | Genome-wide meta-analysis for severe diabetic retinopathy. |
Disease/Trait | Diabetic retinopathy |
Initial sample | 973 European ancestry cases, 1,856 European ancestry controls |
Replication sample | NA |
Region | 3q25.31 |
Chromosome id | chr3 |
Chromosome position | 157136953 |
Reported gene | LEKR1, CCNL1 |
Mapped gene | LINC00880 - CCNL1 |
Upstream gene id | 339894 |
Downstream gene id | 57018 |
SNP gene ids | |
Upstream gene distance | 13951 |
Downstream gene distance | 9411 |
SNP risk allele | rs13064954-G |
SNPs | rs13064954 |
Merged | 0 |
SNP id current | 13064954 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.04 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 1.02 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [2543887] (imputed) |
CNV | N |
Mapped trait | diabetic retinopathy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003770 |
Study accession | GCST001017 |
PubMed ID | 21685187 |
Journal | Thorax |
Link | www.ncbi.nlm.nih.gov/pubmed/21685187 |
Study | Genome-wide association study of smoking behaviours in patients with COPD. |
Disease/Trait | Smoking cessation in chronic obstructive pulmonary disease |
Initial sample | 1,907 European ancestry former smoker cases, 1,164 European ancestry current smoker cases |
Replication sample | NA |
Region | 3q25.31 |
Chromosome id | chr3 |
Chromosome position | 157136953 |
Reported gene | CCNL1 |
Mapped gene | LINC00880 - CCNL1 |
Upstream gene id | 339894 |
Downstream gene id | 57018 |
SNP gene ids | |
Upstream gene distance | 13951 |
Downstream gene distance | 9411 |
SNP risk allele | rs13064954-A |
SNPs | rs13064954 |
Merged | 0 |
SNP id current | 13064954 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.05 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.94 |
%95 Ci | |
Platform | Illumina [~ 6300000] (imputed) |
CNV | N |
Mapped trait | chronic obstructive pulmonary disease, smoking cessation |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004319 |
Study accession | GCST001108 |