SNP Detail For rs13064773
1.Mapping Information
Human SNP ID rs13064773
Human chromosome chr3
Human SNP position 158893105
Pig chromosome chr13
Pig SNP position 106981729
2.Annotation Information
PubMed ID25461247
JournalPharmacogenet Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/25461247
StudyGenome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.
Disease/TraitResponse to abacavir-containing treatment in HIV-1 infection (virologic failure)
Initial sampleUp 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals
Replication sampleNA
Region3q25.32
Chromosome idchr3
Chromosome position158893105
Reported geneNR
Mapped geneLOC105374181 - LOC105374182
Upstream gene id105374181
Downstream gene id105374182
SNP gene ids
Upstream gene distance8469
Downstream gene distance30934
SNP risk allelers13064773-A
SNPsrs13064773
Merged0
SNP id current13064773
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000008
Pvalue mlog6.09691001300805
P value text(phenotype 3)
Or beta2.26
%95 Ci[NR]
PlatformIllumina [> 8000000] (imputed)
CNVN
Mapped traitHIV-1 infection, virologic response measurement, response to abacavir
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006906, http://www.ebi.ac.uk/efo/EFO_0006905
Study accessionGCST002769
PubMed ID25461247
JournalPharmacogenet Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/25461247
StudyGenome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.
Disease/TraitResponse to efavirenz-containing treatment in HIV 1 infection (virologic failure)
Initial sampleUp to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals
Replication sampleNA
Region3q25.32
Chromosome idchr3
Chromosome position158893105
Reported geneNR
Mapped geneLOC105374181 - LOC105374182
Upstream gene id105374181
Downstream gene id105374182
SNP gene ids
Upstream gene distance8469
Downstream gene distance30934
SNP risk allelers13064773-A
SNPsrs13064773
Merged0
SNP id current13064773
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000008
Pvalue mlog6.09691001300805
P value text(phenotype 1)
Or beta2.26
%95 Ci[NR]
PlatformIllumina [> 8000000] (imputed)
CNVN
Mapped traitHIV-1 infection, response to efavirenz, virologic response measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006904, http://www.ebi.ac.uk/efo/EFO_0006906
Study accessionGCST002771