SNP Detail For rs13045180
1.Mapping Information
Human SNP ID rs13045180
Human chromosome chr20
Human SNP position 32943738
Pig chromosome chr17
Pig SNP position 41415963
2.Annotation Information
PubMed ID23028342
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23028342
StudyNew susceptibility loci associated with kidney disease in type 1 diabetes.
Disease/TraitType 1 diabetes nephropathy
Initial sampleUp to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy
Replication sampleUp to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy
Region20q11.21
Chromosome idchr20
Chromosome position32943738
Reported geneintergenic
Mapped geneEFCAB8
Upstream gene id
Downstream gene id
SNP gene ids388795
Upstream gene distance
Downstream gene distance
SNP risk allelers13045180-T
SNPsrs13045180
Merged0
SNP id current13045180
Contextstop_gained
Intergenic0
Allele frequency0.19
P value0.000009
Pvalue mlog5.04575749056067
P value text(ESRD)
Or beta1.28
%95 Ci[1.15-1.43]
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittype 1 diabetes nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004996
Study accessionGCST001688