Human SNP ID | rs13045180 |
---|---|
Human chromosome | chr20 |
Human SNP position | 32943738 |
Pig chromosome | chr17 |
Pig SNP position | 41415963 |
PubMed ID | 23028342 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23028342 |
Study | New susceptibility loci associated with kidney disease in type 1 diabetes. |
Disease/Trait | Type 1 diabetes nephropathy |
Initial sample | Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy |
Replication sample | Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy |
Region | 20q11.21 |
Chromosome id | chr20 |
Chromosome position | 32943738 |
Reported gene | intergenic |
Mapped gene | EFCAB8 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 388795 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13045180-T |
SNPs | rs13045180 |
Merged | 0 |
SNP id current | 13045180 |
Context | stop_gained |
Intergenic | 0 |
Allele frequency | 0.19 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (ESRD) |
Or beta | 1.28 |
%95 Ci | [1.15-1.43] |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | type 1 diabetes nephropathy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004996 |
Study accession | GCST001688 |