Human SNP ID | rs13042473 |
---|---|
Human chromosome | chr20 |
Human SNP position | 42781261 |
Pig chromosome | chr17 |
Pig SNP position | 50612198 |
PubMed ID | 24315451 |
---|---|
Journal | J Allergy Clin Immunol |
Link | www.ncbi.nlm.nih.gov/pubmed/24315451 |
Study | Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants. |
Disease/Trait | Fractional exhaled nitric oxide (childhood) |
Initial sample | 5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals |
Replication sample | NA |
Region | 20q12 |
Chromosome id | chr20 |
Chromosome position | 42781261 |
Reported gene | PTPRT |
Mapped gene | PTPRT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 11122 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13042473-G |
SNPs | rs13042473 |
Merged | 0 |
SNP id current | 13042473 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.19 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 0.069 |
%95 Ci | [0.038-0.1] unit increase |
Platform | Affymetrix, Illumina [2253077] (imputed) |
CNV | N |
Mapped trait | nitric oxide exhalation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005536 |
Study accession | GCST002304 |
PubMed ID | 24315451 |
Journal | J Allergy Clin Immunol |
Link | www.ncbi.nlm.nih.gov/pubmed/24315451 |
Study | Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants. |
Disease/Trait | Fractional exhaled nitric oxide (childhood) |
Initial sample | 5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals |
Replication sample | NA |
Region | 20q12 |
Chromosome id | chr20 |
Chromosome position | 42781261 |
Reported gene | PTPRT |
Mapped gene | PTPRT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 11122 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13042473-G |
SNPs | rs13042473 |
Merged | 0 |
SNP id current | 13042473 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.18 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (EA) |
Or beta | 0.09 |
%95 Ci | [0.053-0.127] unit increase |
Platform | Affymetrix, Illumina [2253077] (imputed) |
CNV | N |
Mapped trait | nitric oxide exhalation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005536 |
Study accession | GCST002304 |