Human SNP ID | rs13034020 |
---|---|
Human chromosome | chr2 |
Human SNP position | 60816699 |
Pig chromosome | chr3 |
Pig SNP position | 85065792 |
PubMed ID | 24920014 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/24920014 |
Study | A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus. |
Disease/Trait | Hodgkin__s lymphoma |
Initial sample | 1,816 European ancestry cases, 7,877 European ancestry controls |
Replication sample | 1,281 European ancestry cases, 3,218 European ancestry controls |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 60816699 |
Reported gene | REL |
Mapped gene | PAPOLG - LINC01185 |
Upstream gene id | 64895 |
Downstream gene id | 400957 |
SNP gene ids | |
Upstream gene distance | 14613 |
Downstream gene distance | 31061 |
SNP risk allele | rs13034020-G |
SNPs | rs13034020 |
Merged | 0 |
SNP id current | 13034020 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.16 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.28 |
%95 Ci | [1.16鈥?.43] |
Platform | Affymetrix, Illumina [1004829] (imputed) |
CNV | N |
Mapped trait | Hodgkins lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000183 |
Study accession | GCST002480 |