SNP Detail For rs13034020
1.Mapping Information
Human SNP ID rs13034020
Human chromosome chr2
Human SNP position 60816699
Pig chromosome chr3
Pig SNP position 85065792
2.Annotation Information
PubMed ID24920014
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/24920014
StudyA meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.
Disease/TraitHodgkin__s lymphoma
Initial sample1,816 European ancestry cases, 7,877 European ancestry controls
Replication sample1,281 European ancestry cases, 3,218 European ancestry controls
Region2p16.1
Chromosome idchr2
Chromosome position60816699
Reported geneREL
Mapped genePAPOLG - LINC01185
Upstream gene id64895
Downstream gene id400957
SNP gene ids
Upstream gene distance14613
Downstream gene distance31061
SNP risk allelers13034020-G
SNPsrs13034020
Merged0
SNP id current13034020
Contextintergenic_variant
Intergenic1
Allele frequency0.16
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.28
%95 Ci[1.16鈥?.43]
PlatformAffymetrix, Illumina [1004829] (imputed)
CNVN
Mapped traitHodgkins lymphoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000183
Study accessionGCST002480