SNP Detail For rs13030978
1.Mapping Information
Human SNP ID rs13030978
Human chromosome chr2
Human SNP position 191252512
Pig chromosome chr15
Pig SNP position 107192412
2.Annotation Information
PubMed ID22001757
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22001757
StudyGenome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.
Disease/TraitLiver enzyme levels (gamma-glutamyl transferase)
Initial sampleUp to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals
Replication sampleNA
Region2q32.3
Chromosome idchr2
Chromosome position191252512
Reported geneMYO1B, STAT4
Mapped geneMYO1B
Upstream gene id
Downstream gene id
SNP gene ids4430
Upstream gene distance
Downstream gene distance
SNP risk allelers13030978-T
SNPsrs13030978
Merged0
SNP id current13030978
Contextintron_variant
Intergenic0
Allele frequency0.32
P value0.00000000001
Pvalue mlog11
P value text
Or beta3.7
%95 Ci[2.80-4.6] % increase
PlatformAffymetrix, Illumina, Perlegen [~ 2600000] (imputed)
CNVN
Mapped traitserum gamma-glutamyl transferase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004532
Study accessionGCST001277