SNP Detail For rs13026414
1.Mapping Information
Human SNP ID rs13026414
Human chromosome chr2
Human SNP position 57706920
Pig chromosome chr3
Pig SNP position 88502903
2.Annotation Information
PubMed ID22949513
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22949513
StudyGenome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32
Disease/TraitEpilepsy (generalized)
Initial sample702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls
Replication sample347 European ancestry genetic absence epilepsies trios, 166 European ancestry juvenile myoclonic epilepsy trios, 91 European ancestry other genetic generalized epilepsies trios, 385 European ancestry genetic absence epilepsies cases, 382 European ancestry
Region2p16.1
Chromosome idchr2
Chromosome position57706920
Reported geneintergenic
Mapped geneLOC105377632, LOC105377629, LOC101927235
Upstream gene id
Downstream gene id
SNP gene ids105377632, 105377629, 101927235
Upstream gene distance
Downstream gene distance
SNP risk allelers13026414-C
SNPsrs13026414
Merged0
SNP id current13026414
Contextintergenic_variant
Intergenic0
Allele frequency0.576
P value0.000000002
Pvalue mlog8.69897000433601
P value text(All GGE)
Or beta1.23
%95 Ci[1.15-1.32]
PlatformAffymetrix [4560000] (imputed)
CNVN
Mapped traitepilepsy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000474
Study accessionGCST001662