Human SNP ID | rs13025591 |
---|---|
Human chromosome | chr2 |
Human SNP position | 235886699 |
Pig chromosome | chr15 |
Pig SNP position | 150224230 |
PubMed ID | 21926974 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21926974 |
Study | Genome-wide association study identifies five new schizophrenia loci. |
Disease/Trait | Schizophrenia |
Initial sample | 9,394 European ancestry cases, 12,462 European ancestry controls |
Replication sample | 8,442 European ancestry cases, 21,397 European ancestry controls |
Region | 2q37.2 |
Chromosome id | chr2 |
Chromosome position | 235886699 |
Reported gene | NR |
Mapped gene | AGAP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 116987 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13025591-? |
SNPs | rs13025591 |
Merged | 0 |
SNP id current | 13025591 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.07 |
%95 Ci | [1.04-1.11] |
Platform | Affymetrix, Illumina [1252901] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001242 |
PubMed ID | 22688191 |
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/22688191 |
Study | Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder. |
Disease/Trait | Schizophrenia |
Initial sample | 2,111 European ancestry cases, 2,535 European ancestry controls |
Replication sample | 11,271 European ancestry cases, 14,601 European ancestry controls |
Region | 2q37.2 |
Chromosome id | chr2 |
Chromosome position | 235886699 |
Reported gene | CENTG2 |
Mapped gene | AGAP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 116987 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13025591-? |
SNPs | rs13025591 |
Merged | 0 |
SNP id current | 13025591 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | |
Or beta | 1.11 |
%95 Ci | [NR] |
Platform | Affymetrix [745006] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001565 |