SNP Detail For rs13025591
1.Mapping Information
Human SNP ID rs13025591
Human chromosome chr2
Human SNP position 235886699
Pig chromosome chr15
Pig SNP position 150224230
2.Annotation Information
PubMed ID21926974
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21926974
StudyGenome-wide association study identifies five new schizophrenia loci.
Disease/TraitSchizophrenia
Initial sample9,394 European ancestry cases, 12,462 European ancestry controls
Replication sample8,442 European ancestry cases, 21,397 European ancestry controls
Region2q37.2
Chromosome idchr2
Chromosome position235886699
Reported geneNR
Mapped geneAGAP1
Upstream gene id
Downstream gene id
SNP gene ids116987
Upstream gene distance
Downstream gene distance
SNP risk allelers13025591-?
SNPsrs13025591
Merged0
SNP id current13025591
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.07
%95 Ci[1.04-1.11]
PlatformAffymetrix, Illumina [1252901] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001242
PubMed ID22688191
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/22688191
StudyGenome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.
Disease/TraitSchizophrenia
Initial sample2,111 European ancestry cases, 2,535 European ancestry controls
Replication sample11,271 European ancestry cases, 14,601 European ancestry controls
Region2q37.2
Chromosome idchr2
Chromosome position235886699
Reported geneCENTG2
Mapped geneAGAP1
Upstream gene id
Downstream gene id
SNP gene ids116987
Upstream gene distance
Downstream gene distance
SNP risk allelers13025591-?
SNPsrs13025591
Merged0
SNP id current13025591
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000008
Pvalue mlog7.09691001300805
P value text
Or beta1.11
%95 Ci[NR]
PlatformAffymetrix [745006]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001565