SNP Detail For rs13015447
1.Mapping Information
Human SNP ID rs13015447
Human chromosome chr2
Human SNP position 166521468
Pig chromosome chr15
Pig SNP position 81577911
2.Annotation Information
PubMed ID19451621
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/19451621
StudyReduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.
Disease/TraitAmyotrophic lateral sclerosis
Initial sample1,821 cases, 2,258 controls
Replication sample538 cases, 556 controls
Region2q24.3
Chromosome idchr2
Chromosome position166521468
Reported geneSCN7A
Mapped geneLOC105373731
Upstream gene id
Downstream gene id
SNP gene ids105373731
Upstream gene distance
Downstream gene distance
SNP risk allelers13015447-G
SNPsrs13015447
Merged0
SNP id current13015447
Contextintergenic_variant
Intergenic0
Allele frequency0.34
P value0.000007
Pvalue mlog5.15490195998574
P value text(site of onset)
Or beta1.41
%95 Ci[NR]
PlatformIllumina [288357]
CNVN
Mapped traitamyotrophic lateral sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000253
Study accessionGCST000406