SNP Detail For rs13006833
1.Mapping Information
Human SNP ID rs13006833
Human chromosome chr2
Human SNP position 190340773
Pig chromosome chr15
Pig SNP position 106338324
2.Annotation Information
PubMed ID26352407
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26352407
StudyGenome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.
Disease/TraitUrinary metabolites
Initial sample3,861 European ancestry individuals
Replication sample1,691European ancestry individuals
Region2q32.2
Chromosome idchr2
Chromosome position190340773
Reported geneHIBCH
Mapped geneHIBCH - LOC105373800
Upstream gene id26275
Downstream gene id105373800
SNP gene ids
Upstream gene distance20728
Downstream gene distance1498
SNP risk allelers13006833-G
SNPsrs13006833
Merged
SNP id current13006833
Contextintron_variant
Intergenic1
Allele frequency0.39
P value2E-20
Pvalue mlog19.698970004336
P value text(1.067 ppm/1.049 ppm)
Or beta0.0293
%95 Ci[NR] unit increase
PlatformAffymetrix [620456]
CNVN
Mapped traiturinary metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005116
Study accessionGCST003119