SNP Detail For rs12999542
1.Mapping Information
Human SNP ID rs12999542
Human chromosome chr2
Human SNP position 102348932
Pig chromosome chr3
Pig SNP position 54378256
2.Annotation Information
PubMed ID23999434
JournalJ Clin Invest
Linkwww.ncbi.nlm.nih.gov/pubmed/23999434
StudyCommon genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.
Disease/TraitSerum protein levels (sST2)
Initial sample2,797 individuals
Replication sampleNA
Region2q12.1
Chromosome idchr2
Chromosome position102348932
Reported geneIL1RL1
Mapped geneIL1RL1
Upstream gene id
Downstream gene id
SNP gene ids9173
Upstream gene distance
Downstream gene distance
SNP risk allelers12999542-C
SNPsrs12999542
Merged0
SNP id current12999542
Contextintron_variant
Intergenic0
Allele frequency0.11
P value2E-27
Pvalue mlog26.698970004336
P value text
Or beta0.15
%95 Ci[0.13-0.17] unit decrease
PlatformAffymetrix [2500000] (imputed)
CNVN
Mapped traitserum ST2 measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005416
Study accessionGCST002166