SNP Detail For rs12996281
1.Mapping Information
Human SNP ID rs12996281
Human chromosome chr2
Human SNP position 228861490
Pig chromosome chr15
Pig SNP position 143863146
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region2q36.3
Chromosome idchr2
Chromosome position228861490
Reported geneNR
Mapped geneLOC101928765 - PID1
Upstream gene id101928765
Downstream gene id55022
SNP gene ids
Upstream gene distance116809
Downstream gene distance162483
SNP risk allelers12996281-?
SNPsrs12996281
Merged
SNP id current12996281
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(Japanese)
Or beta0.5723
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957