Human SNP ID | rs12996281 |
---|---|
Human chromosome | chr2 |
Human SNP position | 228861490 |
Pig chromosome | chr15 |
Pig SNP position | 143863146 |
PubMed ID | 26053186 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26053186 |
Study | Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. |
Disease/Trait | 3-hydroxy-1-methylpropylmercapturic acid levels in smokers |
Initial sample | 361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals |
Replication sample | NA |
Region | 2q36.3 |
Chromosome id | chr2 |
Chromosome position | 228861490 |
Reported gene | NR |
Mapped gene | LOC101928765 - PID1 |
Upstream gene id | 101928765 |
Downstream gene id | 55022 |
SNP gene ids | |
Upstream gene distance | 116809 |
Downstream gene distance | 162483 |
SNP risk allele | rs12996281-? |
SNPs | rs12996281 |
Merged | |
SNP id current | 12996281 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (Japanese) |
Or beta | 0.5723 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [up to 11892802] (imputed) |
CNV | N |
Mapped trait | smoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015 |
Study accession | GCST002957 |