Human SNP ID | rs12991836 |
---|---|
Human chromosome | chr2 |
Human SNP position | 144383974 |
Pig chromosome | chr15 |
Pig SNP position | 8031057 |
PubMed ID | 23974872 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23974872 |
Study | Genome-wide association analysis identifies 13 new risk loci for schizophrenia. |
Disease/Trait | Schizophrenia |
Initial sample | 5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls |
Replication sample | 4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios |
Region | 2q22.3 |
Chromosome id | chr2 |
Chromosome position | 144383974 |
Reported gene | ZEB2 |
Mapped gene | GTDC1 - ZEB2 |
Upstream gene id | 79712 |
Downstream gene id | 9839 |
SNP gene ids | |
Upstream gene distance | 51440 |
Downstream gene distance | 401 |
SNP risk allele | rs12991836-C |
SNPs | rs12991836 |
Merged | 0 |
SNP id current | 12991836 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.348 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.05-1.11] |
Platform | Affymetrix, Illumina [9871789] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST002149 |
PubMed ID | 26198764 |
Journal | Am J Med Genet B Neuropsychiatr Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26198764 |
Study | Genome-wide association study of schizophrenia in Ashkenazi Jews. |
Disease/Trait | Schizophrenia |
Initial sample | 592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls |
Replication sample | NA |
Region | 2q22.3 |
Chromosome id | chr2 |
Chromosome position | 144383974 |
Reported gene | NR |
Mapped gene | GTDC1 - ZEB2 |
Upstream gene id | 79712 |
Downstream gene id | 9839 |
SNP gene ids | |
Upstream gene distance | 51440 |
Downstream gene distance | 401 |
SNP risk allele | rs12991836-C |
SNPs | rs12991836 |
Merged | 0 |
SNP id current | 12991836 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 1.0526316 |
%95 Ci | [NR] |
Platform | Illumina [7158791] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST003048 |