Human SNP ID | rs12988934 |
---|---|
Human chromosome | chr2 |
Human SNP position | 181458938 |
Pig chromosome | chr15 |
Pig SNP position | 96522797 |
PubMed ID | 21738478 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21738478 |
Study | Identification of nine novel loci associated with white blood cell subtypes in a Japanese population. |
Disease/Trait | White blood cell types |
Initial sample | 8,794 Japanese ancestry individuals |
Replication sample | 5,998 Japanese ancestry individuals |
Region | 2q31.3 |
Chromosome id | chr2 |
Chromosome position | 181458938 |
Reported gene | ITGA4 |
Mapped gene | ITGA4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3676 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12988934-T |
SNPs | rs12988934 |
Merged | 0 |
SNP id current | 12988934 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.27 |
P value | 0.00000000000002 |
Pvalue mlog | 13.698970004336 |
P value text | (monocyte count) |
Or beta | 0.109 |
%95 Ci | [0.08-0.14] unit increase |
Platform | Illumina [2178645] (imputed) |
CNV | N |
Mapped trait | monocyte count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005091 |
Study accession | GCST001134 |