SNP Detail For rs12988934
1.Mapping Information
Human SNP ID rs12988934
Human chromosome chr2
Human SNP position 181458938
Pig chromosome chr15
Pig SNP position 96522797
2.Annotation Information
PubMed ID21738478
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21738478
StudyIdentification of nine novel loci associated with white blood cell subtypes in a Japanese population.
Disease/TraitWhite blood cell types
Initial sample8,794 Japanese ancestry individuals
Replication sample5,998 Japanese ancestry individuals
Region2q31.3
Chromosome idchr2
Chromosome position181458938
Reported geneITGA4
Mapped geneITGA4
Upstream gene id
Downstream gene id
SNP gene ids3676
Upstream gene distance
Downstream gene distance
SNP risk allelers12988934-T
SNPsrs12988934
Merged0
SNP id current12988934
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.27
P value0.00000000000002
Pvalue mlog13.698970004336
P value text(monocyte count)
Or beta0.109
%95 Ci[0.08-0.14] unit increase
PlatformIllumina [2178645] (imputed)
CNVN
Mapped traitmonocyte count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005091
Study accessionGCST001134