Human SNP ID | rs1297265 |
---|---|
Human chromosome | chr21 |
Human SNP position | 15444732 |
Pig chromosome | chr13 |
Pig SNP position | 190557449 |
PubMed ID | 21297633 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21297633 |
Study | Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47. |
Disease/Trait | Ulcerative colitis |
Initial sample | 6,687 European ancestry cases, 19,718 European ancestry controls |
Replication sample | 9,628 European ancestry cases, 12,917 European ancestry controls |
Region | 21q21.1 |
Chromosome id | chr21 |
Chromosome position | 15444732 |
Reported gene | intergenic |
Mapped gene | LOC101927745 - LOC105369302 |
Upstream gene id | 101927745 |
Downstream gene id | 105369302 |
SNP gene ids | |
Upstream gene distance | 58 |
Downstream gene distance | 126466 |
SNP risk allele | rs1297265-A |
SNPs | rs1297265 |
Merged | 0 |
SNP id current | 1297265 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.56 |
P value | 0.0000000000007 |
Pvalue mlog | 12.1549019599857 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.06-1.15] |
Platform | Affymetrix, Illumina [~ 1100000] (imputed) |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST000964 |