SNP Detail For rs1297265
1.Mapping Information
Human SNP ID rs1297265
Human chromosome chr21
Human SNP position 15444732
Pig chromosome chr13
Pig SNP position 190557449
2.Annotation Information
PubMed ID21297633
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21297633
StudyMeta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.
Disease/TraitUlcerative colitis
Initial sample6,687 European ancestry cases, 19,718 European ancestry controls
Replication sample9,628 European ancestry cases, 12,917 European ancestry controls
Region21q21.1
Chromosome idchr21
Chromosome position15444732
Reported geneintergenic
Mapped geneLOC101927745 - LOC105369302
Upstream gene id101927745
Downstream gene id105369302
SNP gene ids
Upstream gene distance58
Downstream gene distance126466
SNP risk allelers1297265-A
SNPsrs1297265
Merged0
SNP id current1297265
Contextintron_variant
Intergenic1
Allele frequency0.56
P value0.0000000000007
Pvalue mlog12.1549019599857
P value text
Or beta1.11
%95 Ci[1.06-1.15]
PlatformAffymetrix, Illumina [~ 1100000] (imputed)
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST000964