SNP Detail For rs12967884
1.Mapping Information
Human SNP ID rs12967884
Human chromosome chr18
Human SNP position 78831635
Pig chromosome chr1
Pig SNP position 162066512
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitSubcutaneous adipose tissue
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region18q23
Chromosome idchr18
Chromosome position78831635
Reported geneSALL3
Mapped geneLOC105372223 - LOC105372224
Upstream gene id105372223
Downstream gene id105372224
SNP gene ids
Upstream gene distance12724
Downstream gene distance76977
SNP risk allelers12967884-A
SNPsrs12967884
Merged0
SNP id current12967884
Contextintergenic_variant
Intergenic1
Allele frequency0.89
P value0.000007
Pvalue mlog5.15490195998574
P value text(overall)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitsubcutaneous adipose tissue measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004766
Study accessionGCST001521