Human SNP ID | rs12967884 |
---|---|
Human chromosome | chr18 |
Human SNP position | 78831635 |
Pig chromosome | chr1 |
Pig SNP position | 162066512 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Subcutaneous adipose tissue |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 18q23 |
Chromosome id | chr18 |
Chromosome position | 78831635 |
Reported gene | SALL3 |
Mapped gene | LOC105372223 - LOC105372224 |
Upstream gene id | 105372223 |
Downstream gene id | 105372224 |
SNP gene ids | |
Upstream gene distance | 12724 |
Downstream gene distance | 76977 |
SNP risk allele | rs12967884-A |
SNPs | rs12967884 |
Merged | 0 |
SNP id current | 12967884 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.89 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (overall) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | subcutaneous adipose tissue measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004766 |
Study accession | GCST001521 |