SNP Detail For rs12966547
1.Mapping Information
Human SNP ID rs12966547
Human chromosome chr18
Human SNP position 55084786
Pig chromosome chr1
Pig SNP position 114978272
2.Annotation Information
PubMed ID21926974
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21926974
StudyGenome-wide association study identifies five new schizophrenia loci.
Disease/TraitSchizophrenia
Initial sample9,394 European ancestry cases, 12,462 European ancestry controls
Replication sample8,442 European ancestry cases, 21,397 European ancestry controls
Region18q21.2
Chromosome idchr18
Chromosome position55084786
Reported geneCCDC68
Mapped geneLOC105372125
Upstream gene id
Downstream gene id
SNP gene ids105372125
Upstream gene distance
Downstream gene distance
SNP risk allelers12966547-G
SNPsrs12966547
Merged0
SNP id current12966547
Contextregulatory_region_variant
Intergenic0
Allele frequency0.58
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.4
%95 Ci[1.28-1.52]
PlatformAffymetrix, Illumina [1252901] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001242
PubMed ID23453885
JournalLancet
Linkwww.ncbi.nlm.nih.gov/pubmed/23453885
StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
Disease/TraitAutism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)
Initial sample6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder tr
Replication sampleNA
Region18q21.2
Chromosome idchr18
Chromosome position55084786
Reported geneCCDC68
Mapped geneLOC105372125
Upstream gene id
Downstream gene id
SNP gene ids105372125
Upstream gene distance
Downstream gene distance
SNP risk allelers12966547-?
SNPsrs12966547
Merged0
SNP id current12966547
Contextregulatory_region_variant
Intergenic0
Allele frequency0.588
P value0.0000000003
Pvalue mlog9.52287874528033
P value text(Modelling analysis)
Or beta
%95 Ci
PlatformNR [1252901] (imputed)
CNVN
Mapped traitattention deficit hyperactivity disorder, unipolar depression, schizophrenia, autism spectrum disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003888, http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0003756, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001877