Human SNP ID | rs12949531 |
---|---|
Human chromosome | chr17 |
Human SNP position | 13830489 |
Pig chromosome | chr12 |
Pig SNP position | 60774618 |
PubMed ID | 19165918 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19165918 |
Study | Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 431 European ancestry cases, 2,155 European ancestry controls |
Replication sample | 447 European ancestry trios, 293 trios |
Region | 17p12 |
Chromosome id | chr17 |
Chromosome position | 13830489 |
Reported gene | intergenic |
Mapped gene | LOC100506974 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100506974 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12949531-? |
SNPs | rs12949531 |
Merged | 0 |
SNP id current | 12949531 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.22 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | |
%95 Ci | [NR] |
Platform | Affymetrix [313238] |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST000216 |