SNP Detail For rs12949531
1.Mapping Information
Human SNP ID rs12949531
Human chromosome chr17
Human SNP position 13830489
Pig chromosome chr12
Pig SNP position 60774618
2.Annotation Information
PubMed ID19165918
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19165918
StudyGenetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample431 European ancestry cases, 2,155 European ancestry controls
Replication sample447 European ancestry trios, 293 trios
Region17p12
Chromosome idchr17
Chromosome position13830489
Reported geneintergenic
Mapped geneLOC100506974
Upstream gene id
Downstream gene id
SNP gene ids100506974
Upstream gene distance
Downstream gene distance
SNP risk allelers12949531-?
SNPsrs12949531
Merged0
SNP id current12949531
Contextintron_variant
Intergenic0
Allele frequency0.22
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta
%95 Ci[NR]
PlatformAffymetrix [313238]
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST000216