SNP Detail For rs12938078
1.Mapping Information
Human SNP ID rs12938078
Human chromosome chr17
Human SNP position 57665916
Pig chromosome chr12
Pig SNP position 34814553
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region17q22
Chromosome idchr17
Chromosome position57665916
Reported geneNR
Mapped geneMSI2
Upstream gene id
Downstream gene id
SNP gene ids124540
Upstream gene distance
Downstream gene distance
SNP risk allelers12938078-A
SNPsrs12938078
Merged
SNP id current12938078
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.07
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048