Human SNP ID | rs12927205 |
---|---|
Human chromosome | chr16 |
Human SNP position | 71991178 |
Pig chromosome | chr17 |
Pig SNP position | 57231312 |
PubMed ID | 26582766 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26582766 |
Study | Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations. |
Disease/Trait | LDL cholesterol |
Initial sample | 8,344 Han Chinese ancestry individuals |
Replication sample | 14,739 Han Chinese ancestry individuals |
Region | 16q22.2 |
Chromosome id | chr16 |
Chromosome position | 71991178 |
Reported gene | HPR |
Mapped gene | PKD1L3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 342372 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12927205-A |
SNPs | rs12927205 |
Merged | |
SNP id current | 12927205 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.74 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 1.462 |
%95 Ci | [0.86-2.07] unit increase |
Platform | Affymetrix, Illumina [2573667] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST003216 |
PubMed ID | 26582766 |
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26582766 |
Study | Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations. |
Disease/Trait | Cholesterol, total |
Initial sample | 8,344 Han Chinese ancestry individuals |
Replication sample | 14,739 Han Chinese ancestry individuals |
Region | 16q22.2 |
Chromosome id | chr16 |
Chromosome position | 71991178 |
Reported gene | HPR |
Mapped gene | PKD1L3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 342372 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12927205-A |
SNPs | rs12927205 |
Merged | |
SNP id current | 12927205 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.74 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 1.784 |
%95 Ci | [1.07-2.49] unit increase |
Platform | Affymetrix, Illumina [2573667] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST003214 |