SNP Detail For rs12927205
1.Mapping Information
Human SNP ID rs12927205
Human chromosome chr16
Human SNP position 71991178
Pig chromosome chr17
Pig SNP position 57231312
2.Annotation Information
PubMed ID26582766
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26582766
StudyGenetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.
Disease/TraitLDL cholesterol
Initial sample8,344 Han Chinese ancestry individuals
Replication sample14,739 Han Chinese ancestry individuals
Region16q22.2
Chromosome idchr16
Chromosome position71991178
Reported geneHPR
Mapped genePKD1L3
Upstream gene id
Downstream gene id
SNP gene ids342372
Upstream gene distance
Downstream gene distance
SNP risk allelers12927205-A
SNPsrs12927205
Merged
SNP id current12927205
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.74
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta1.462
%95 Ci[0.86-2.07] unit increase
PlatformAffymetrix, Illumina [2573667] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST003216
PubMed ID26582766
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26582766
StudyGenetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.
Disease/TraitCholesterol, total
Initial sample8,344 Han Chinese ancestry individuals
Replication sample14,739 Han Chinese ancestry individuals
Region16q22.2
Chromosome idchr16
Chromosome position71991178
Reported geneHPR
Mapped genePKD1L3
Upstream gene id
Downstream gene id
SNP gene ids342372
Upstream gene distance
Downstream gene distance
SNP risk allelers12927205-A
SNPsrs12927205
Merged
SNP id current12927205
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.74
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta1.784
%95 Ci[1.07-2.49] unit increase
PlatformAffymetrix, Illumina [2573667] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST003214